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CyPose - Specialist Models for Cyanobacteria Live Cell Movies

CyPose is a set of specialist segmentation and classification models for photosynthetic bacteria (cyanobacteria), as well as a set of utilities to make training CellPose easier for users who have live cell movies as opposed to single frame data. Code for CyPose can be found at https://github.com/cameronlab/cypose.

Note

If you're looking to get started quickly, check out the installation instructions.

Key documentation:

  • Installation - Instructions on installing CyPose and its dependencies on your machine.
  • Segmentation - Considerations for using generalist and specialist segmentation models.
  • Classification - Considerations for classification models as well as instructions on training your own model.

The CyPose Team:
Zachary Maas • Clair Huffine • Anton Avramov • Chris Brininger • Jian Wei Tay • Jeffrey Cameron